Resources

An important focus of our work is to provide the developed tools and results to the scientific public through free software-tools and open data sets to encourage broad use. We are also involved in numerous initiatives such as the Human Brain Project, VirtualBrainCloud, IRTG2150, SFB 1451 and BrainMap.

The provision of infrastructure by means of software, tools and data is part of the mission of the INM-7. Below you can find the details about the services that we offer.

ANIMA

ANIMA is the Archive of Neuroimaging Meta-Analyses.

JuBrain Anatomy Toolbox

The JuBrain Anatomy Toolbox (a.k.a. SPM Anatomy Toolbox) is an SPM plugin with probabilistic cytoarchitectonic maps for combination with functional neuroimaging data.

JuLearn

julearn is a user-oriented machine-learning library. At the Applied Machine Learning (AML) group we thought that using ML in research could be simpler.

JuSpace

JuSpace is a toolbox allowing for cross-modal correlation of MRI-based measures with nuclear imaging derived estimates.

DataLad

DataLad aims to provide access to scientific data available from various sources through a single convenient interface and integrated with your software package managers (such as APT in Debian).

NeuroDebian

NeuroDebian provides a large collection of popular neuroscience research software for the Debian operating system as well as Ubuntu and other derivatives. Popular packages include AFNI, FSL, PyMVPA and many others.

PyMVPA

PyMVPA is a Python package intended to ease statistical learning analyses of large datasets.

StudyForrest

Studyforrest is an open invitation to anyone and everyone to participate in a decentralized effort to explore the opportunities of open science in neuroimaging.

Connectivity-Based Parcellation (CBP)

Regional connectivity-based parcellation (CBP) is a procedure for regional mapping by long-range connectivity profiles (Eickhoff et al., 2015), revealing brain organization within a region-of-interest (ROI).

DCTS Webtool

The DCTS webtool is an online Dimensions and Clustering Tool for assessing schizophrenia Symptomatology based on the Positive and Negative Syndrome Scale (PANSS).

GingerALE

GingerALE is the BrainMap application that is used to perform an ALE meta-analysis on coordinates in Talairach or MNI space. GingerALE can also be used to convert coordinates between MNI and Talairach spaces using the icbm2tal transform.

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